Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: pysam
Upstream-Contact: Andreas Heger <andreas.heger@gmail.com>
Source: https://github.com/pysam-developers/pysam
Files-Excluded: htslib/*
                win32

Files: *
Copyright: 2009-2025 Andreas Heger,
                      Tildon Grant Belgrad,
                      Martin Goodson,
                      Florian Finkernagel,
                      Leo Goodstadt,
                      John Marshall,
                      Kevin Jacobs <jacobs@bionformed.com>,
                      Gerton Lunter,
                      Marcel Martin,
                      Heng Li,
                      Bob Handsaker
           2008-2024 Genome Research Ltd.
License: MIT
Comment:
 Authors list originates from the AUTHORS file, authors copyright years
 originate from doc/conf.py.

Files: bcftools/*
Copyright:
         2013-2018 Genome Research Ltd.
         2010-2011 Broad Institute
License: MIT

Files: samtools/*
Copyright: 2009-2012 Broad Institute
           2008-2014 Genome Research Ltd.
License: MIT

Files: samtools/bam_cat.*
Copyright: 2008-2009, 2011-2013 Genome Research Ltd.
           2010 Illumina, Inc.
License: MIT

Files: samtools/bam_color.*
Copyright: 2009, 2012 University of California - Los Angeles
License: MIT

Files: samtools/bam_index.*
       samtools/bam_mate.*
Copyright: 2008-2014 Genome Research Ltd.
           2010-2011 Broad Institute
           2012-2013 Peter Cock, The James Hutton Institute
License: MIT

Files: samtools/padding.*
Copyright: 2011-2012 Broad Institute
           2014 Genome Research Ltd.
           2012-2013 Peter Cock, The James Hutton Institute
License: MIT

Files: samtools/lz4/*
Copyright: 2011-2017, Yann Collet.
License: BSD-2-Clause
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are
 met:
 .
  * Redistributions of source code must retain the above copyright
    notice, this list of conditions and the following disclaimer.
  * Redistributions in binary form must reproduce the above
    copyright notice, this list of conditions and the following disclaimer
    in the documentation and/or other materials provided with the
    distribution.
 .
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
 A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
 OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
 LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
 DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
 THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Files: bcftools/utlist.h
Copyright: 2007-2014, Troy D. Hanson
License: BSD-1-clause
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are met:
 .
    * Redistributions of source code must retain the above copyright
      notice, this list of conditions and the following disclaimer.
 .
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
 IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
 TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
 PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER
 OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
 EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
 PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
 PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
 LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
 NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
 SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Files: debian/*
Copyright:
         2015-2016 Afif Elghraoui <afif@debian.org>
         2015 Jorge Soares <j.s.soares@gmail.com>
         2014-2015 Charles Plessy <plessy@debian.org>
         2014-2018 Andreas Tille <tille@debian.org>
License: MIT

License: MIT
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal
 in the Software without restriction, including without limitation the rights
 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 copies of the Software, and to permit persons to whom the Software is
 furnished to do so, subject to the following conditions:
 .
 The above copyright notice and this permission notice shall be included in
 all copies or substantial portions of the Software.
 .
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
 THE SOFTWARE.
