Last updated on 2026-11-02 04:55:15 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 4.23 | 41.46 | 45.69 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 3.60 | 33.23 | 36.83 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 31.57 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 30.51 | ERROR | |||
| r-devel-windows-x86_64 | 1.0.1 | 7.00 | 72.00 | 79.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.1 | 4.53 | 37.43 | 41.96 | ERROR | |
| r-release-linux-x86_64 | 1.0.1 | 4.39 | 37.39 | 41.78 | ERROR | |
| r-release-macos-arm64 | 1.0.1 | 1.00 | 30.00 | 31.00 | OK | |
| r-release-macos-x86_64 | 1.0.1 | 4.00 | 68.00 | 72.00 | OK | |
| r-release-windows-x86_64 | 1.0.1 | 6.00 | 82.00 | 88.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.1 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.1 | 3.00 | 61.00 | 64.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.1 | 9.00 | 74.00 | 83.00 | ERROR |
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘ptm-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: meto.list
> ### Title: List Proteins Found in MetOSite Matching a Keyword
> ### Aliases: meto.list
>
> ### ** Examples
>
> meto.list('inhibitor')
No encoding supplied: defaulting to UTF-8.
Error: lexical error: invalid char in json text.
<html> <head> <title>Univ
(right here) ------^
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ptm)
>
> test_check("ptm")
Saving _problems/test_metosite-37.R
Saving _problems/test_metosite-68.R
[ FAIL 2 | WARN 1 | SKIP 11 | PASS 5 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (10): 'test_aa.R:8:3', 'test_aa.R:23:3', 'test_aa.R:52:3',
'test_aa.R:88:3', 'test_getseq.R:8:3', 'test_getseq.R:31:3',
'test_gracefully.R:8:3', 'test_saromatic.R:9:3', 'test_saromatic.R:38:3',
'test_saromatic.R:78:3'
• empty test (1): 'test_metosite.R:7:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_metosite.R:37:3'): meto.scan() works properly ──────────────────
Error: lexical error: invalid char in json text.
<html> <head> <title>Univ
(right here) ------^
Backtrace:
▆
1. └─ptm::meto.scan("P01009") at test_metosite.R:37:3
2. └─jsonlite::fromJSON(output, flatten = TRUE)
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_string(txt, bigint_as_char)
── Error ('test_metosite.R:68:3'): meto.list() works properly ──────────────────
Error: lexical error: invalid char in json text.
<html> <head> <title>Univ
(right here) ------^
Backtrace:
▆
1. └─ptm::meto.list("calcium") at test_metosite.R:68:3
2. └─jsonlite::fromJSON(entries, flatten = TRUE)
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_string(txt, bigint_as_char)
[ FAIL 2 | WARN 1 | SKIP 11 | PASS 5 ]
Error:
! Test failures.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-release-linux-x86_64
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ptm)
>
> test_check("ptm")
Saving _problems/test_metosite-37.R
Saving _problems/test_metosite-68.R
[ FAIL 2 | WARN 1 | SKIP 11 | PASS 5 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (10): 'test_aa.R:8:3', 'test_aa.R:23:3', 'test_aa.R:52:3',
'test_aa.R:88:3', 'test_getseq.R:8:3', 'test_getseq.R:31:3',
'test_gracefully.R:8:3', 'test_saromatic.R:9:3', 'test_saromatic.R:38:3',
'test_saromatic.R:78:3'
• empty test (1): 'test_metosite.R:7:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_metosite.R:37:3'): meto.scan() works properly ──────────────────
Error: lexical error: invalid char in json text.
<html> <head> <title>Univ
(right here) ------^
Backtrace:
▆
1. └─ptm::meto.scan("P01009") at test_metosite.R:37:3
2. └─jsonlite::fromJSON(output, flatten = TRUE)
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_string(txt, bigint_as_char)
── Error ('test_metosite.R:68:3'): meto.list() works properly ──────────────────
Error: lexical error: invalid char in json text.
<html> <head> <title>Univ
(right here) ------^
Backtrace:
▆
1. └─ptm::meto.list("calcium") at test_metosite.R:68:3
2. └─jsonlite::fromJSON(entries, flatten = TRUE)
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_string(txt, bigint_as_char)
[ FAIL 2 | WARN 1 | SKIP 11 | PASS 5 ]
Error:
! Test failures.
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘ptm-Ex.R’ failed
The error most likely occurred in:
> ### Name: meto.list
> ### Title: List Proteins Found in MetOSite Matching a Keyword
> ### Aliases: meto.list
>
> ### ** Examples
>
> meto.list('inhibitor')
No encoding supplied: defaulting to UTF-8.
Error: lexical error: invalid char in json text.
<html> <head> <title>Univ
(right here) ------^
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ptm)
>
> test_check("ptm")
Saving _problems/test_metosite-37.R
Saving _problems/test_metosite-68.R
[ FAIL 2 | WARN 1 | SKIP 11 | PASS 5 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (10): 'test_aa.R:8:3', 'test_aa.R:23:3', 'test_aa.R:52:3',
'test_aa.R:88:3', 'test_getseq.R:8:3', 'test_getseq.R:31:3',
'test_gracefully.R:8:3', 'test_saromatic.R:9:3', 'test_saromatic.R:38:3',
'test_saromatic.R:78:3'
• empty test (1): 'test_metosite.R:7:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_metosite.R:37:3'): meto.scan() works properly ──────────────────
Error: lexical error: invalid char in json text.
<html> <head> <title>Univ
(right here) ------^
Backtrace:
▆
1. └─ptm::meto.scan("P01009") at test_metosite.R:37:3
2. └─jsonlite::fromJSON(output, flatten = TRUE)
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_string(txt, bigint_as_char)
── Error ('test_metosite.R:68:3'): meto.list() works properly ──────────────────
Error: lexical error: invalid char in json text.
<html> <head> <title>Univ
(right here) ------^
Backtrace:
▆
1. └─ptm::meto.list("calcium") at test_metosite.R:68:3
2. └─jsonlite::fromJSON(entries, flatten = TRUE)
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_string(txt, bigint_as_char)
[ FAIL 2 | WARN 1 | SKIP 11 | PASS 5 ]
Error:
! Test failures.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.1
Check: tests
Result: ERROR
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(ptm)
>
> test_check("ptm")
Saving _problems/test_metosite-37.R
Saving _problems/test_metosite-68.R
[ FAIL 2 | WARN 1 | SKIP 11 | PASS 5 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (10): 'test_aa.R:8:3', 'test_aa.R:23:3', 'test_aa.R:52:3',
'test_aa.R:88:3', 'test_getseq.R:8:3', 'test_getseq.R:31:3',
'test_gracefully.R:8:3', 'test_saromatic.R:9:3', 'test_saromatic.R:38:3',
'test_saromatic.R:78:3'
• empty test (1): 'test_metosite.R:7:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_metosite.R:37:3'): meto.scan() works properly ──────────────────
Error: lexical error: invalid char in json text.
<html> <head> <title>Univ
(right here) ------^
Backtrace:
▆
1. └─ptm::meto.scan("P01009") at test_metosite.R:37:3
2. └─jsonlite::fromJSON(output, flatten = TRUE)
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_string(txt, bigint_as_char)
── Error ('test_metosite.R:68:3'): meto.list() works properly ──────────────────
Error: lexical error: invalid char in json text.
<html> <head> <title>Univ
(right here) ------^
Backtrace:
▆
1. └─ptm::meto.list("calcium") at test_metosite.R:68:3
2. └─jsonlite::fromJSON(entries, flatten = TRUE)
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_string(txt, bigint_as_char)
[ FAIL 2 | WARN 1 | SKIP 11 | PASS 5 ]
Error:
! Test failures.
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘ptm-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: meto.list
> ### Title: List Proteins Found in MetOSite Matching a Keyword
> ### Aliases: meto.list
>
> ### ** Examples
>
> meto.list('inhibitor')
No encoding supplied: defaulting to UTF-8.
Error: lexical error: invalid char in json text.
<html> <head> <title>Univ
(right here) ------^
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
get.seq 0.142 0 10.026
Flavor: r-release-linux-x86_64