Last updated on 2026-10-15 08:52:59 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 45.86 | OK | |||
| r-release-macos-arm64 | 1.0.0 | 1.00 | 22.00 | 23.00 | ERROR | |
| r-release-macos-x86_64 | 1.0.0 | 3.00 | 71.00 | 74.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.0 | ERROR | ||||
| r-oldrel-macos-x86_64 | 1.0.0 | 3.00 | 72.00 | 75.00 | ERROR |
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(enviPathR)
>
> test_check("enviPathR")
objc[60924]: +[NSCharacterSet initialize] may have been in progress in another thread when fork() was called.
objc[60924]: +[NSCharacterSet initialize] may have been in progress in another thread when fork() was called. We cannot safely call it or ignore it in the fork() child process. Crashing instead. Set a breakpoint on objc_initializeAfterForkError to debug.
Saving _problems/test-get-18.R
objc[61028]: +[NSCharacterSet initialize] may have been in progress in another thread when fork() was called.
objc[61028]: +[NSCharacterSet initialize] may have been in progress in another thread when fork() was called. We cannot safely call it or ignore it in the fork() child process. Crashing instead. Set a breakpoint on objc_initializeAfterForkError to debug.
Saving _problems/test-link-19.R
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 20 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-get.R:14:9'): get ──────────────────────────────────────────────
Error in `reducer$value.cache[[as.character(idx)]] <- values`: wrong args for environment subassignment
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-get.R:14:9
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─enviPathR::epGet("reaction", "wrong")
8. ├─BiocParallel::bpmapply(...)
9. └─BiocParallel::bpmapply(...)
10. ├─BiocParallel::bplapply(...)
11. └─BiocParallel::bplapply(...)
12. └─BiocParallel:::.bpinit(...)
13. ├─BiocParallel::bploop(...)
14. └─BiocParallel:::bploop.lapply(...)
15. └─BiocParallel:::.bploop_impl(...)
16. └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
17. ├─BiocParallel:::.reducer_add(reducer, njob, value)
18. └─BiocParallel:::.reducer_add(reducer, njob, value)
── Error ('test-link.R:15:9'): link ────────────────────────────────────────────
Error in `reducer$value.cache[[as.character(idx)]] <- values`: wrong args for environment subassignment
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-link.R:15:9
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─enviPathR::epLink(types[1], types[2], "wrong")
8. ├─BiocParallel::bplapply(...)
9. └─BiocParallel::bplapply(...)
10. └─BiocParallel:::.bpinit(...)
11. ├─BiocParallel::bploop(...)
12. └─BiocParallel:::bploop.lapply(...)
13. └─BiocParallel:::.bploop_impl(...)
14. └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
15. ├─BiocParallel:::.reducer_add(reducer, njob, value)
16. └─BiocParallel:::.reducer_add(reducer, njob, value)
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 20 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-arm64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(enviPathR)
>
> test_check("enviPathR")
objc[56365]: +[NSNumber initialize] may have been in progress in another thread when fork() was called.
objc[56365]: +[NSNumber initialize] may have been in progress in another thread when fork() was called. We cannot safely call it or ignore it in the fork() child process. Crashing instead. Set a breakpoint on objc_initializeAfterForkError to debug.
Saving _problems/test-get-18.R
objc[56579]: +[NSNumber initialize] may have been in progress in another thread when fork() was called.
objc[56579]: +[NSNumber initialize] may have been in progress in another thread when fork() was called. We cannot safely call it or ignore it in the fork() child process. Crashing instead. Set a breakpoint on objc_initializeAfterForkError to debug.
Saving _problems/test-link-19.R
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 20 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-get.R:14:9'): get ──────────────────────────────────────────────
Error in `reducer$value.cache[[as.character(idx)]] <- values`: wrong args for environment subassignment
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-get.R:14:9
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─enviPathR::epGet("reaction", "wrong")
8. ├─BiocParallel::bpmapply(...)
9. └─BiocParallel::bpmapply(...)
10. ├─BiocParallel::bplapply(...)
11. └─BiocParallel::bplapply(...)
12. └─BiocParallel:::.bpinit(...)
13. ├─BiocParallel::bploop(...)
14. └─BiocParallel:::bploop.lapply(...)
15. └─BiocParallel:::.bploop_impl(...)
16. └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
17. ├─BiocParallel:::.reducer_add(reducer, njob, value)
18. └─BiocParallel:::.reducer_add(reducer, njob, value)
── Error ('test-link.R:15:9'): link ────────────────────────────────────────────
Error in `reducer$value.cache[[as.character(idx)]] <- values`: wrong args for environment subassignment
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-link.R:15:9
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─enviPathR::epLink(types[1], types[2], "wrong")
8. ├─BiocParallel::bplapply(...)
9. └─BiocParallel::bplapply(...)
10. └─BiocParallel:::.bpinit(...)
11. ├─BiocParallel::bploop(...)
12. └─BiocParallel:::bploop.lapply(...)
13. └─BiocParallel:::.bploop_impl(...)
14. └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
15. ├─BiocParallel:::.reducer_add(reducer, njob, value)
16. └─BiocParallel:::.reducer_add(reducer, njob, value)
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 20 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(enviPathR)
>
> test_check("enviPathR")
objc[90619]: +[NSNumber initialize] may have been in progress in another thread when fork() was called.
objc[90619]: +[NSNumber initialize] may have been in progress in another thread when fork() was called. We cannot safely call it or ignore it in the fork() child process. Crashing instead. Set a breakpoint on objc_initializeAfterForkError to debug.
Saving _problems/test-get-18.R
objc[90705]: +[NSNumber initialize] may have been in progress in another thread when fork() was called.
objc[90705]: +[NSNumber initialize] may have been in progress in another thread when fork() was called. We cannot safely call it or ignore it in the fork() child process. Crashing instead. Set a breakpoint on objc_initializeAfterForkError to debug.
Saving _problems/test-link-19.R
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 20 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-get.R:14:9'): get ──────────────────────────────────────────────
Error in `reducer$value.cache[[as.character(idx)]] <- values`: wrong args for environment subassignment
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-get.R:14:9
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─enviPathR::epGet("reaction", "wrong")
8. ├─BiocParallel::bpmapply(...)
9. └─BiocParallel::bpmapply(...)
10. ├─BiocParallel::bplapply(...)
11. └─BiocParallel::bplapply(...)
12. └─BiocParallel:::.bpinit(...)
13. ├─BiocParallel::bploop(...)
14. └─BiocParallel:::bploop.lapply(...)
15. └─BiocParallel:::.bploop_impl(...)
16. └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
17. ├─BiocParallel:::.reducer_add(reducer, njob, value)
18. └─BiocParallel:::.reducer_add(reducer, njob, value)
── Error ('test-link.R:15:9'): link ────────────────────────────────────────────
Error in `reducer$value.cache[[as.character(idx)]] <- values`: wrong args for environment subassignment
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-link.R:15:9
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─enviPathR::epLink(types[1], types[2], "wrong")
8. ├─BiocParallel::bplapply(...)
9. └─BiocParallel::bplapply(...)
10. └─BiocParallel:::.bpinit(...)
11. ├─BiocParallel::bploop(...)
12. └─BiocParallel:::bploop.lapply(...)
13. └─BiocParallel:::.bploop_impl(...)
14. └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
15. ├─BiocParallel:::.reducer_add(reducer, njob, value)
16. └─BiocParallel:::.reducer_add(reducer, njob, value)
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 20 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(enviPathR)
>
> test_check("enviPathR")
objc[11983]: +[NSNumber initialize] may have been in progress in another thread when fork() was called.
objc[11983]: +[NSNumber initialize] may have been in progress in another thread when fork() was called. We cannot safely call it or ignore it in the fork() child process. Crashing instead. Set a breakpoint on objc_initializeAfterForkError to debug.
Saving _problems/test-get-18.R
objc[12158]: +[NSNumber initialize] may have been in progress in another thread when fork() was called.
objc[12158]: +[NSNumber initialize] may have been in progress in another thread when fork() was called. We cannot safely call it or ignore it in the fork() child process. Crashing instead. Set a breakpoint on objc_initializeAfterForkError to debug.
Saving _problems/test-link-19.R
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 20 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-get.R:14:9'): get ──────────────────────────────────────────────
Error in `reducer$value.cache[[as.character(idx)]] <- values`: wrong args for environment subassignment
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-get.R:14:9
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─enviPathR::epGet("reaction", "wrong")
8. ├─BiocParallel::bpmapply(...)
9. └─BiocParallel::bpmapply(...)
10. ├─BiocParallel::bplapply(...)
11. └─BiocParallel::bplapply(...)
12. └─BiocParallel:::.bpinit(...)
13. ├─BiocParallel::bploop(...)
14. └─BiocParallel:::bploop.lapply(...)
15. └─BiocParallel:::.bploop_impl(...)
16. └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
17. ├─BiocParallel:::.reducer_add(reducer, njob, value)
18. └─BiocParallel:::.reducer_add(reducer, njob, value)
── Error ('test-link.R:15:9'): link ────────────────────────────────────────────
Error in `reducer$value.cache[[as.character(idx)]] <- values`: wrong args for environment subassignment
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-link.R:15:9
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─enviPathR::epLink(types[1], types[2], "wrong")
8. ├─BiocParallel::bplapply(...)
9. └─BiocParallel::bplapply(...)
10. └─BiocParallel:::.bpinit(...)
11. ├─BiocParallel::bploop(...)
12. └─BiocParallel:::bploop.lapply(...)
13. └─BiocParallel:::.bploop_impl(...)
14. └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
15. ├─BiocParallel:::.reducer_add(reducer, njob, value)
16. └─BiocParallel:::.reducer_add(reducer, njob, value)
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 20 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64