Last updated on 2026-10-10 16:51:27 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.0 | 9.01 | 194.70 | 203.71 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.1.0 | 6.39 | 66.22 | 72.61 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.1.0 | 7.00 | 64.14 | 71.14 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.1.0 | 7.00 | 74.55 | 81.55 | ERROR | |
| r-devel-windows-x86_64 | 2.0.0 | 12.00 | 398.00 | 410.00 | OK | |
| r-patched-linux-x86_64 | 2.0.0 | 7.65 | 244.14 | 251.79 | OK | |
| r-release-linux-x86_64 | 2.0.0 | OK | ||||
| r-release-macos-arm64 | 2.1.0 | 2.00 | 73.00 | 75.00 | OK | |
| r-release-macos-x86_64 | 2.1.0 | 7.00 | 336.00 | 343.00 | OK | |
| r-release-windows-x86_64 | 2.0.0 | 11.00 | 357.00 | 368.00 | OK | |
| r-oldrel-macos-arm64 | 2.1.0 | 3.00 | 116.00 | 119.00 | OK | |
| r-oldrel-macos-x86_64 | 2.1.0 | 6.00 | 272.00 | 278.00 | OK | |
| r-oldrel-windows-x86_64 | 2.1.0 | 19.00 | 125.00 | 144.00 | ERROR |
Version: 2.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SelfControlledCohort)
Loading required package: DatabaseConnector
> options(dbms = "sqlite")
> test_check("SelfControlledCohort")
attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
attempting to extract and load: /home/hornik/tmp/scratch/RtmpobnRDv/GiBleed_5.3.zip to: /home/hornik/tmp/scratch/RtmpobnRDv/GiBleed_5.3.sqlite
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error:
! not an error
Backtrace:
▆
1. ├─testthat::test_check("SelfControlledCohort")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─SelfControlledCohort:::getTestDatabaseConnectionDetails(...) at ./setup.R:13:1
15. │ └─Eunomia::getDatabaseFile(...) at ./helper.R:39:5
16. │ └─Eunomia::extractLoadData(...)
17. │ └─Eunomia::loadDataFiles(...)
18. │ ├─DBI::dbExecute(conn = connection, statement = statement)
19. │ └─DBI::dbExecute(conn = connection, statement = statement)
20. │ ├─DBI::dbSendStatement(conn, statement, ...)
21. │ └─DBI::dbSendStatement(conn, statement, ...)
22. │ ├─DBI::dbSendQuery(conn, statement, ...)
23. │ └─RSQLite::dbSendQuery(conn, statement, ...)
24. │ └─RSQLite (local) .local(conn, statement, ...)
25. │ ├─methods::new(...)
26. │ │ ├─methods::initialize(value, ...)
27. │ │ └─methods::initialize(value, ...)
28. │ └─RSQLite:::result_create(conn@ptr, statement)
29. └─base::.handleSimpleError(`<fn>`, "not an error", base::quote(NULL))
30. └─testthat (local) h(simpleError(msg, call))
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘StudyDiagnostics.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘StudyDiagnostics.Rmd’
--- re-building ‘UsingSelfControlledCohort.Rmd’ using rmarkdown
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
Quitting from UsingSelfControlledCohort.Rmd:31-43 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! not an error
---
Backtrace:
▆
1. └─Eunomia::getEunomiaConnectionDetails()
2. └─Eunomia::getDatabaseFile(...)
3. └─Eunomia::extractLoadData(...)
4. └─Eunomia::loadDataFiles(...)
5. ├─DBI::dbExecute(conn = connection, statement = statement)
6. └─DBI::dbExecute(conn = connection, statement = statement)
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─RSQLite::dbSendQuery(conn, statement, ...)
11. └─RSQLite (local) .local(conn, statement, ...)
12. ├─methods::new(...)
13. │ ├─methods::initialize(value, ...)
14. │ └─methods::initialize(value, ...)
15. └─RSQLite:::result_create(conn@ptr, statement)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'UsingSelfControlledCohort.Rmd' failed with diagnostics:
not an error
--- failed re-building ‘UsingSelfControlledCohort.Rmd’
SUMMARY: processing the following file failed:
‘UsingSelfControlledCohort.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SelfControlledCohort)
Loading required package: DatabaseConnector
> options(dbms = "sqlite")
> test_check("SelfControlledCohort")
attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
attempting to extract and load: /tmp/RtmpX9BqZ7/working_dir/RtmprdrueZ/GiBleed_5.3.zip to: /tmp/RtmpX9BqZ7/working_dir/RtmprdrueZ/GiBleed_5.3.sqlite
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error:
! not an error
Backtrace:
▆
1. ├─testthat::test_check("SelfControlledCohort")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─SelfControlledCohort:::getTestDatabaseConnectionDetails(...) at ./setup.R:13:1
15. │ └─Eunomia::getDatabaseFile(...) at ./helper.R:39:5
16. │ └─Eunomia::extractLoadData(...)
17. │ └─Eunomia::loadDataFiles(...)
18. │ ├─DBI::dbExecute(conn = connection, statement = statement)
19. │ └─DBI::dbExecute(conn = connection, statement = statement)
20. │ ├─DBI::dbSendStatement(conn, statement, ...)
21. │ └─DBI::dbSendStatement(conn, statement, ...)
22. │ ├─DBI::dbSendQuery(conn, statement, ...)
23. │ └─RSQLite::dbSendQuery(conn, statement, ...)
24. │ └─RSQLite (local) .local(conn, statement, ...)
25. │ ├─methods::new(...)
26. │ │ ├─methods::initialize(value, ...)
27. │ │ └─methods::initialize(value, ...)
28. │ └─RSQLite:::result_create(conn@ptr, statement)
29. └─base::.handleSimpleError(`<fn>`, "not an error", base::quote(NULL))
30. └─testthat (local) h(simpleError(msg, call))
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘StudyDiagnostics.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘StudyDiagnostics.Rmd’
--- re-building ‘UsingSelfControlledCohort.Rmd’ using rmarkdown
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
Quitting from UsingSelfControlledCohort.Rmd:31-43 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! not an error
---
Backtrace:
▆
1. └─Eunomia::getEunomiaConnectionDetails()
2. └─Eunomia::getDatabaseFile(...)
3. └─Eunomia::extractLoadData(...)
4. └─Eunomia::loadDataFiles(...)
5. ├─DBI::dbExecute(conn = connection, statement = statement)
6. └─DBI::dbExecute(conn = connection, statement = statement)
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─RSQLite::dbSendQuery(conn, statement, ...)
11. └─RSQLite (local) .local(conn, statement, ...)
12. ├─methods::new(...)
13. │ ├─methods::initialize(value, ...)
14. │ └─methods::initialize(value, ...)
15. └─RSQLite:::result_create(conn@ptr, statement)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'UsingSelfControlledCohort.Rmd' failed with diagnostics:
not an error
--- failed re-building ‘UsingSelfControlledCohort.Rmd’
SUMMARY: processing the following file failed:
‘UsingSelfControlledCohort.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SelfControlledCohort)
Loading required package: DatabaseConnector
> options(dbms = "sqlite")
> test_check("SelfControlledCohort")
attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
attempting to extract and load: /tmp/RtmpW7u1Ji/working_dir/RtmppeR8JN/GiBleed_5.3.zip to: /tmp/RtmpW7u1Ji/working_dir/RtmppeR8JN/GiBleed_5.3.sqlite
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error:
! not an error
Backtrace:
▆
1. ├─testthat::test_check("SelfControlledCohort")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─SelfControlledCohort:::getTestDatabaseConnectionDetails(...) at ./setup.R:13:1
15. │ └─Eunomia::getDatabaseFile(...) at ./helper.R:39:5
16. │ └─Eunomia::extractLoadData(...)
17. │ └─Eunomia::loadDataFiles(...)
18. │ ├─DBI::dbExecute(conn = connection, statement = statement)
19. │ └─DBI::dbExecute(conn = connection, statement = statement)
20. │ ├─DBI::dbSendStatement(conn, statement, ...)
21. │ └─DBI::dbSendStatement(conn, statement, ...)
22. │ ├─DBI::dbSendQuery(conn, statement, ...)
23. │ └─RSQLite::dbSendQuery(conn, statement, ...)
24. │ └─RSQLite (local) .local(conn, statement, ...)
25. │ ├─methods::new(...)
26. │ │ ├─methods::initialize(value, ...)
27. │ │ └─methods::initialize(value, ...)
28. │ └─RSQLite:::result_create(conn@ptr, statement)
29. └─base::.handleSimpleError(`<fn>`, "not an error", base::quote(NULL))
30. └─testthat (local) h(simpleError(msg, call))
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.1.0
Check: tests
Result: ERROR
Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(SelfControlledCohort)
Loading required package: DatabaseConnector
> options(dbms = "sqlite")
> test_check("SelfControlledCohort")
attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
attempting to extract and load: D:\temp\2026_10_09_10_23_25_30964\RtmpApKtlV/GiBleed_5.3.zip to: D:\temp\2026_10_09_10_23_25_30964\RtmpApKtlV/GiBleed_5.3.sqlite
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error:
! not an error
Backtrace:
▆
1. ├─testthat::test_check("SelfControlledCohort")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─SelfControlledCohort:::getTestDatabaseConnectionDetails(...) at ./setup.R:13:1
15. │ └─Eunomia::getDatabaseFile(...) at ./helper.R:39:5
16. │ └─Eunomia::extractLoadData(...)
17. │ └─Eunomia::loadDataFiles(...)
18. │ ├─DBI::dbExecute(conn = connection, statement = statement)
19. │ └─DBI::dbExecute(conn = connection, statement = statement)
20. │ ├─DBI::dbSendStatement(conn, statement, ...)
21. │ └─DBI::dbSendStatement(conn, statement, ...)
22. │ ├─DBI::dbSendQuery(conn, statement, ...)
23. │ └─RSQLite::dbSendQuery(conn, statement, ...)
24. │ └─RSQLite (local) .local(conn, statement, ...)
25. │ ├─methods::new(...)
26. │ │ ├─methods::initialize(value, ...)
27. │ │ └─methods::initialize(value, ...)
28. │ └─RSQLite:::result_create(conn@ptr, statement)
29. └─base::.handleSimpleError(`<fn>`, "not an error", base::quote(NULL))
30. └─testthat (local) h(simpleError(msg, call))
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
Flavor: r-oldrel-windows-x86_64
Version: 2.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'StudyDiagnostics.Rmd' using rmarkdown
--- finished re-building 'StudyDiagnostics.Rmd'
--- re-building 'UsingSelfControlledCohort.Rmd' using rmarkdown
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
Quitting from UsingSelfControlledCohort.Rmd:31-43 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! not an error
---
Backtrace:
▆
1. └─Eunomia::getEunomiaConnectionDetails()
2. └─Eunomia::getDatabaseFile(...)
3. └─Eunomia::extractLoadData(...)
4. └─Eunomia::loadDataFiles(...)
5. ├─DBI::dbExecute(conn = connection, statement = statement)
6. └─DBI::dbExecute(conn = connection, statement = statement)
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─RSQLite::dbSendQuery(conn, statement, ...)
11. └─RSQLite (local) .local(conn, statement, ...)
12. ├─methods::new(...)
13. │ ├─methods::initialize(value, ...)
14. │ └─methods::initialize(value, ...)
15. └─RSQLite:::result_create(conn@ptr, statement)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'UsingSelfControlledCohort.Rmd' failed with diagnostics:
not an error
--- failed re-building 'UsingSelfControlledCohort.Rmd'
SUMMARY: processing the following file failed:
'UsingSelfControlledCohort.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64