Last updated on 2026-10-10 16:51:13 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1 | 18.14 | 271.84 | 289.98 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1 | 13.22 | 90.16 | 103.38 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1 | 13.00 | 89.41 | 102.41 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.1 | 13.00 | 110.60 | 123.60 | ERROR | |
| r-devel-windows-x86_64 | 1.1.1 | 22.00 | 334.00 | 356.00 | OK | |
| r-patched-linux-x86_64 | 1.1.1 | 19.09 | 289.49 | 308.58 | OK | |
| r-release-linux-x86_64 | 1.1.1 | OK | ||||
| r-release-macos-arm64 | 1.1.1 | 4.00 | 96.00 | 100.00 | OK | |
| r-release-macos-x86_64 | 1.1.1 | 12.00 | 338.00 | 350.00 | OK | |
| r-release-windows-x86_64 | 1.1.1 | 21.00 | 329.00 | 350.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.1 | 4.00 | 104.00 | 108.00 | OK | |
| r-oldrel-macos-x86_64 | 1.1.1 | 12.00 | 368.00 | 380.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1.1 | 27.00 | 399.00 | 426.00 | OK |
Version: 1.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(CohortGenerator)
Loading required package: DatabaseConnector
Loading required package: R6
>
> test_check("CohortGenerator")
attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
attempting to extract and load: /home/hornik/tmp/scratch/RtmpgcMz8f/GiBleed_5.3.zip to: /home/hornik/tmp/scratch/RtmpgcMz8f/GiBleed_5.3.sqlite
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error:
! not an error
Backtrace:
▆
1. ├─testthat::test_check("CohortGenerator")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─Eunomia::getEunomiaConnectionDetails() at ./setup.R:2:1
15. │ └─Eunomia::getDatabaseFile(...)
16. │ └─Eunomia::extractLoadData(...)
17. │ └─Eunomia::loadDataFiles(...)
18. │ ├─DBI::dbExecute(conn = connection, statement = statement)
19. │ └─DBI::dbExecute(conn = connection, statement = statement)
20. │ ├─DBI::dbSendStatement(conn, statement, ...)
21. │ └─DBI::dbSendStatement(conn, statement, ...)
22. │ ├─DBI::dbSendQuery(conn, statement, ...)
23. │ └─RSQLite::dbSendQuery(conn, statement, ...)
24. │ └─RSQLite (local) .local(conn, statement, ...)
25. │ ├─methods::new(...)
26. │ │ ├─methods::initialize(value, ...)
27. │ │ └─methods::initialize(value, ...)
28. │ └─RSQLite:::result_create(conn@ptr, statement)
29. └─base::.handleSimpleError(`<fn>`, "not an error", base::quote(NULL))
30. └─testthat (local) h(simpleError(msg, call))
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘CreatingCohortSubsetDefinitions.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘CreatingCohortSubsetDefinitions.Rmd’
--- re-building ‘GeneratingCohorts.Rmd’ using rmarkdown
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
Quitting from GeneratingCohorts.Rmd:122-144 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! not an error
---
Backtrace:
x
1. \-Eunomia::getEunomiaConnectionDetails()
2. \-Eunomia::getDatabaseFile(...)
3. \-Eunomia::extractLoadData(...)
4. \-Eunomia::loadDataFiles(...)
5. +-DBI::dbExecute(conn = connection, statement = statement)
6. \-DBI::dbExecute(conn = connection, statement = statement)
7. +-DBI::dbSendStatement(conn, statement, ...)
8. \-DBI::dbSendStatement(conn, statement, ...)
9. +-DBI::dbSendQuery(conn, statement, ...)
10. \-RSQLite::dbSendQuery(conn, statement, ...)
11. \-RSQLite (local) .local(conn, statement, ...)
12. +-methods::new(...)
13. | +-methods::initialize(value, ...)
14. | \-methods::initialize(value, ...)
15. \-RSQLite:::result_create(conn@ptr, statement)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'GeneratingCohorts.Rmd' failed with diagnostics:
not an error
--- failed re-building ‘GeneratingCohorts.Rmd’
--- re-building ‘SamplingCohorts.Rmd’ using rmarkdown
--- finished re-building ‘SamplingCohorts.Rmd’
--- re-building ‘UsingTemplateCohorts.Rmd’ using rmarkdown
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
Quitting from UsingTemplateCohorts.Rmd:40-72 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! not an error
---
Backtrace:
▆
1. ├─DatabaseConnector::connect(Eunomia::getEunomiaConnectionDetails())
2. └─Eunomia::getEunomiaConnectionDetails()
3. └─Eunomia::getDatabaseFile(...)
4. └─Eunomia::extractLoadData(...)
5. └─Eunomia::loadDataFiles(...)
6. ├─DBI::dbExecute(conn = connection, statement = statement)
7. └─DBI::dbExecute(conn = connection, statement = statement)
8. ├─DBI::dbSendStatement(conn, statement, ...)
9. └─DBI::dbSendStatement(conn, statement, ...)
10. ├─DBI::dbSendQuery(conn, statement, ...)
11. └─RSQLite::dbSendQuery(conn, statement, ...)
12. └─RSQLite (local) .local(conn, statement, ...)
13. ├─methods::new(...)
14. │ ├─methods::initialize(value, ...)
15. │ └─methods::initialize(value, ...)
16. └─RSQLite:::result_create(conn@ptr, statement)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'UsingTemplateCohorts.Rmd' failed with diagnostics:
not an error
--- failed re-building ‘UsingTemplateCohorts.Rmd’
SUMMARY: processing the following files failed:
‘GeneratingCohorts.Rmd’ ‘UsingTemplateCohorts.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(CohortGenerator)
Loading required package: DatabaseConnector
Loading required package: R6
>
> test_check("CohortGenerator")
attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
attempting to extract and load: /tmp/Rtmp5ERihY/working_dir/RtmpcSa1rD/GiBleed_5.3.zip to: /tmp/Rtmp5ERihY/working_dir/RtmpcSa1rD/GiBleed_5.3.sqlite
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error:
! not an error
Backtrace:
▆
1. ├─testthat::test_check("CohortGenerator")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─Eunomia::getEunomiaConnectionDetails() at ./setup.R:2:1
15. │ └─Eunomia::getDatabaseFile(...)
16. │ └─Eunomia::extractLoadData(...)
17. │ └─Eunomia::loadDataFiles(...)
18. │ ├─DBI::dbExecute(conn = connection, statement = statement)
19. │ └─DBI::dbExecute(conn = connection, statement = statement)
20. │ ├─DBI::dbSendStatement(conn, statement, ...)
21. │ └─DBI::dbSendStatement(conn, statement, ...)
22. │ ├─DBI::dbSendQuery(conn, statement, ...)
23. │ └─RSQLite::dbSendQuery(conn, statement, ...)
24. │ └─RSQLite (local) .local(conn, statement, ...)
25. │ ├─methods::new(...)
26. │ │ ├─methods::initialize(value, ...)
27. │ │ └─methods::initialize(value, ...)
28. │ └─RSQLite:::result_create(conn@ptr, statement)
29. └─base::.handleSimpleError(`<fn>`, "not an error", base::quote(NULL))
30. └─testthat (local) h(simpleError(msg, call))
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘CreatingCohortSubsetDefinitions.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘CreatingCohortSubsetDefinitions.Rmd’
--- re-building ‘GeneratingCohorts.Rmd’ using rmarkdown
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
Quitting from GeneratingCohorts.Rmd:122-144 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! not an error
---
Backtrace:
x
1. \-Eunomia::getEunomiaConnectionDetails()
2. \-Eunomia::getDatabaseFile(...)
3. \-Eunomia::extractLoadData(...)
4. \-Eunomia::loadDataFiles(...)
5. +-DBI::dbExecute(conn = connection, statement = statement)
6. \-DBI::dbExecute(conn = connection, statement = statement)
7. +-DBI::dbSendStatement(conn, statement, ...)
8. \-DBI::dbSendStatement(conn, statement, ...)
9. +-DBI::dbSendQuery(conn, statement, ...)
10. \-RSQLite::dbSendQuery(conn, statement, ...)
11. \-RSQLite (local) .local(conn, statement, ...)
12. +-methods::new(...)
13. | +-methods::initialize(value, ...)
14. | \-methods::initialize(value, ...)
15. \-RSQLite:::result_create(conn@ptr, statement)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'GeneratingCohorts.Rmd' failed with diagnostics:
not an error
--- failed re-building ‘GeneratingCohorts.Rmd’
--- re-building ‘SamplingCohorts.Rmd’ using rmarkdown
--- finished re-building ‘SamplingCohorts.Rmd’
--- re-building ‘UsingTemplateCohorts.Rmd’ using rmarkdown
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
Quitting from UsingTemplateCohorts.Rmd:40-72 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! not an error
---
Backtrace:
▆
1. ├─DatabaseConnector::connect(Eunomia::getEunomiaConnectionDetails())
2. └─Eunomia::getEunomiaConnectionDetails()
3. └─Eunomia::getDatabaseFile(...)
4. └─Eunomia::extractLoadData(...)
5. └─Eunomia::loadDataFiles(...)
6. ├─DBI::dbExecute(conn = connection, statement = statement)
7. └─DBI::dbExecute(conn = connection, statement = statement)
8. ├─DBI::dbSendStatement(conn, statement, ...)
9. └─DBI::dbSendStatement(conn, statement, ...)
10. ├─DBI::dbSendQuery(conn, statement, ...)
11. └─RSQLite::dbSendQuery(conn, statement, ...)
12. └─RSQLite (local) .local(conn, statement, ...)
13. ├─methods::new(...)
14. │ ├─methods::initialize(value, ...)
15. │ └─methods::initialize(value, ...)
16. └─RSQLite:::result_create(conn@ptr, statement)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'UsingTemplateCohorts.Rmd' failed with diagnostics:
not an error
--- failed re-building ‘UsingTemplateCohorts.Rmd’
SUMMARY: processing the following files failed:
‘GeneratingCohorts.Rmd’ ‘UsingTemplateCohorts.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(CohortGenerator)
Loading required package: DatabaseConnector
Loading required package: R6
>
> test_check("CohortGenerator")
attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
attempting to extract and load: /tmp/Rtmpx1fO9a/working_dir/RtmpCE6m7q/GiBleed_5.3.zip to: /tmp/Rtmpx1fO9a/working_dir/RtmpCE6m7q/GiBleed_5.3.sqlite
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error:
! not an error
Backtrace:
▆
1. ├─testthat::test_check("CohortGenerator")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─Eunomia::getEunomiaConnectionDetails() at ./setup.R:2:1
15. │ └─Eunomia::getDatabaseFile(...)
16. │ └─Eunomia::extractLoadData(...)
17. │ └─Eunomia::loadDataFiles(...)
18. │ ├─DBI::dbExecute(conn = connection, statement = statement)
19. │ └─DBI::dbExecute(conn = connection, statement = statement)
20. │ ├─DBI::dbSendStatement(conn, statement, ...)
21. │ └─DBI::dbSendStatement(conn, statement, ...)
22. │ ├─DBI::dbSendQuery(conn, statement, ...)
23. │ └─RSQLite::dbSendQuery(conn, statement, ...)
24. │ └─RSQLite (local) .local(conn, statement, ...)
25. │ ├─methods::new(...)
26. │ │ ├─methods::initialize(value, ...)
27. │ │ └─methods::initialize(value, ...)
28. │ └─RSQLite:::result_create(conn@ptr, statement)
29. └─base::.handleSimpleError(`<fn>`, "not an error", base::quote(NULL))
30. └─testthat (local) h(simpleError(msg, call))
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc