Package: scNPM
Type: Package
Title: Single-Cell Network Propensity Matching
Version: 1.0.6
Date: 2026-10-02
Authors@R: c(
    person(
      given = "Tao",
      family = "Liu",
      email = "25210690190@m.fudan.edu.cn",
      role = c("aut", "cre")
    )
  )
Description: Estimates and compares heterogeneous gene conditional-dependence
    networks from single-cell expression data. A latent Gaussian mixture and
    probit observation mechanism represent cellular heterogeneity and zero
    observations. Protein interaction information supplies edge-specific prior
    weights, while network propensity matching links cell clusters across
    conditions and guides adaptation. Staged inference freezes stable matching,
    disables feedback, and retains baseline-model samples for posterior
    group and directional differential edge selection. Functions assess balance,
    record criterion diagnostics, and visualize within-condition and
    differential networks.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
Imports: Rcpp (>= 1.0.10), Matrix, igraph (>= 1.3.0), ggplot2 (>=
        3.3.0), ggrepel (>= 0.9.0), scales (>= 1.2.0), stats, utils,
        tools
LinkingTo: Rcpp, RcppArmadillo (>= 0.12.6.4.0), RcppParallel (>= 5.1.7)
SystemRequirements: C++17, OpenMP
Depends: R (>= 4.0.0)
URL: https://github.com/taostat1/scNPM_R_package
BugReports: https://github.com/taostat1/scNPM_R_package/issues
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
Config/roxygen2/version: 8.1.0
NeedsCompilation: yes
Packaged: 2026-10-02 13:46:06 UTC; Lenovo
Author: Tao Liu [aut, cre]
Maintainer: Tao Liu <25210690190@m.fudan.edu.cn>
Repository: CRAN
Date/Publication: 2026-10-14 11:20:02 UTC
