80a5ca9800e87725b5703bd52d94ab61 *DESCRIPTION
06ccdfc8b42df6324261c8ba954ff787 *NAMESPACE
19331addab7ae20ff99f5e69ef8f67b2 *NEWS.md
6e398ec0c972a70ca6d03e06d7d8a3c5 *R/AAA.R
696bb3edaced5405134d7a8e2260d9c3 *R/AllClasses.R
297402c11f02a75af28b2a88dbe4ea94 *R/AllGenerics.R
ac8251d6931d46ae4aaef7c27f79a08d *R/DSC_EMM.R
f489436b010f3da0fb521c039b66eff1 *R/DSC_tNN.R
354b68c21d6ef4c77a66a5e8a9f14ee5 *R/EMM.R
7c3ad285b22e848845a58e0dd0d9ed3c *R/SimpleMC.R
2d8404d7df2a32827961a32b503ef7a3 *R/TRAC.R
b94ace5aa52774dab47b1715c632b7d9 *R/TRACDS.R
42cef9fa60d93bcad544b5acfe36e8a2 *R/build.R
b41e6844bd72e696f2a26ded85f33a78 *R/cluster.R
cc1030cf10fe0243737dd80fc6d73e54 *R/combine.R
b444039223a7ad5fc9d7ebce045406a9 *R/compact.R
66822293b3835e389b069b2503ae5e6c *R/data.R
35e18270ef62cb5e7b8611bb208859a2 *R/ellipse.R
224f887fa3174ed9c291f395c71e8f09 *R/fade.R
1e5105eed2e7bc788de2b6172b92d69c *R/graph.R
130ca72cbf04528cd911fb4f497f54db *R/map.R
2603c47fb433c5a7fe79c9406eb84aaf *R/merge.R
a3ea88b76bd35b69bc5e902bb394b228 *R/object.size.R
30f288f843aaa81d5234cab91f272e37 *R/onload.R
68484875e8c4fb1f83e0315d616a6c6b *R/plot.R
c3ab29b6d27a4a98c3289e0984ed2449 *R/predict.R
4e5eea0e483f3d5388b6b6272e2a1ece *R/prune.R
4d84ce27ff8aad0a930b343eefee1e46 *R/rEMM-package.R
f5a3e2d319e72fea854bb3aad606e548 *R/recluster.R
c0f41908d1d13e711549a9d1fba76155 *R/remove.R
61b009066576e5a85b5120d740ab96de *R/reset.R
bf04e72a998d4721ec9cda123dc4c648 *R/score.R
b4daee576def0c3972b85ffb3c68732c *R/smooth_transitions.R
3990bb9352b8c5c608298e03658dd65a *R/synthetic_stream.R
aebb47885b31d9552c6a97fd01fd2e76 *R/tNN.R
5dbf9938703731efe47707f770d4e235 *R/transition.R
409554c5f159a0dd125cacd2f0491181 *R/update.R
25d2f4d0854856341f59f6b17796d772 *README.md
21c9401b8c07f38d762ade4612fc4ffe *build/partial.rdb
657ba89c8b12480a8a1c640dfbd5cd32 *build/vignette.rds
a6973ef7bb46eafc196135623770a47b *data/16S.rda
e34ef68dcc7a7196f9589fda577c74b9 *data/Derwent.rda
2d51dff4cf010b756479e5a3562140d9 *data/EMMTraffic.rda
e3c2237886b4d213bcad7e7fd48923ac *data/EMMsim.rda
55451dbf3b3558d33b698f4c1057a075 *inst/CITATION
482cc4be97dcdacb4dbb7b7c869d0d85 *inst/doc/TRAC.R
2a20194099ee0b7d38d8a99d4b805e19 *inst/doc/TRAC.Rmd
653db239040c97cc38e921c78606ac14 *inst/doc/TRAC.html
a5900c9f2749f4108342ccf4114fc6e3 *inst/doc/rEMM.R
9b48b267829ca007be1c9e3d5c003fd7 *inst/doc/rEMM.Rmd
883904a3117f05f34b930fe56bc1bd2c *inst/doc/rEMM.html
5e54dab520c580db6c876d308466c5d8 *inst/doc/rEMM_paper_vignette.R
e22052ef3c9fee253c6e856c4b5b9d8f *inst/doc/rEMM_paper_vignette.Rnw
68edb967f6d510e894b1ee738dcfbfc8 *inst/doc/rEMM_paper_vignette.pdf
3bfba0ee0ed68aac4683feeb5024e1ab *inst/doc/stream.R
a70effe59d87a55f94ced93f4371f19d *inst/doc/stream.Rmd
475743e1c329455ad38cf44741dba046 *inst/doc/stream.html
10b8142c545935ef16482db21d30f767 *man/DSC_EMM.Rd
8089ed1877c4c7c15e324a67097b1a35 *man/Derwent.Rd
b7958071dfe86e6d2769989a44b7dd67 *man/EMM-class.Rd
e98e7b5099d89d83b091c9cc7625d505 *man/EMMTraffic.Rd
89b41a72f45f0e9e225d48763afaa4e6 *man/EMMsim.Rd
c8884a5bbf363796df4ec92fbaae87ce *man/TRAC-class.Rd
ce7a1101cd98e9b5888954c9cce1a9db *man/TRACDS-class.Rd
d062e93ce3a91e0a1dabf42b608be35a *man/build.Rd
3752c5a7cfb872921664ed7a5c11feeb *man/cluster.Rd
15ccbff249b5d3e15d2f32763ac1a218 *man/combine.Rd
1095375ca34216a1797508c1c07aa957 *man/fade.Rd
e8507355a26c096d6ae0df79ad5b7274 *man/figures/README-example_data-1.png
0edba849b8a4328e1d597d80776879b6 *man/figures/README-example_model-1.png
9cdbc7da13a7a228f4fbccb0b5721a33 *man/figures/logo.svg
edc15b64d7667a50022d01d3a2b2d5a9 *man/find_clusters.Rd
13e0db911c0077e55a583d2ca52d113f *man/merge.Rd
faa3c9f7456d274c501fc704b4db881b *man/plot.EMM.Rd
97c55dae37f8280ff5893792463e5556 *man/predict.Rd
1a72ae87a26727b3100653be0fc5e7d3 *man/prune.Rd
b1df764a4b8a34fa00d4c9fe4a4cbb81 *man/rEMM-package.Rd
8f27614f6bcbc1685ec7874262695307 *man/rRNA16S.Rd
2f60521c07dba494111a82b2c6337036 *man/recluster.Rd
995ef0465cf5aaf5aa5a37301b834c9f *man/remove.Rd
2ea63eecd6535afdd57450c40f9a804c *man/score.Rd
3f8f6d5a99edbdc6f426e85984ccb855 *man/smooth_transitions.Rd
04377a8edbcb188de42607abf00a17a5 *man/synthetic_stream.Rd
a688aed6cdca1938f47cbca5c2ff30e1 *man/tNN-class.Rd
0cdaaceeba612b20f94b554fd78d590e *man/transition.Rd
482ba5c7fbd32a8b239f5a58d609d0d5 *man/transition_table.Rd
20f099feca01e25a7d2e610b30c8fb4a *man/update.Rd
7be494a2d91d738ccc0f97e379e9a28a *tests/testthat.R
b977e9397f35ffb4244a9f1c57c0e751 *tests/testthat/helper-models.R
31de6fe75569685c51b84bf6aea3749b *tests/testthat/test-EMM.R
a1732e3d340a44a9fa465d6c6aaa288f *tests/testthat/test-clustering.R
4f05ab9375a213742a045954f24255a0 *tests/testthat/test-interfaces.R
476c902fe483521f2f92366f5eb871c3 *tests/testthat/test-recluster-fade.R
f9e02d25fdc1698ca13bf4e562757b60 *tests/testthat/test-remove.R
92141d302ae58b23eab5f4827f272351 *tests/testthat/test-score-predict.R
33763528113231b1b6ff6a8e8c0759f7 *tests/testthat/test-transitions.R
2a20194099ee0b7d38d8a99d4b805e19 *vignettes/TRAC.Rmd
726b2291e735287065a818720d784ca1 *vignettes/emm.bib
d7e70192aabbd26d0aa9dac51de441fa *vignettes/misc.bib
9b48b267829ca007be1c9e3d5c003fd7 *vignettes/rEMM.Rmd
6fd3dc91ad5e78fcb171560631d7167d *vignettes/rEMM.bib
364822f0b911ef5c263a524435ab2d78 *vignettes/rEMM_class.odg
23464b1191906a9afc6ecddd7571f0c4 *vignettes/rEMM_class.pdf
e22052ef3c9fee253c6e856c4b5b9d8f *vignettes/rEMM_paper_vignette.Rnw
93acac9a714cf579d86dae090b1a0d35 *vignettes/rna_sequences.bib
a70effe59d87a55f94ced93f4371f19d *vignettes/stream.Rmd
be99981b0ebead7bca77d7c5ba9f91fc *vignettes/stream_clust.bib
