8edeef5f7860101e9a0a46bd8f8fc4ab *DESCRIPTION
9b6f688d877b2f5b371c7499b9f497ce *LICENSE
7e5297a70bd8585284216658f60de401 *NAMESPACE
fe1235e34ab40d9fc5250cf558beec15 *NEWS.md
199f00d5ed0f325ce736e3935e77b1df *R/beetleTreeInteractions.R
caece1ae64dd1cd7060f11648cd94689 *R/bootstrap_phylopred_model.R
7ae6f2dab27345a773146faa96feefa3 *R/cluster_bootstrap_phylopred.R
60d519d864cb098f660728245725106d *R/compare_phylopred_slopes.R
4da234c1e50d590e58c6d098bb192a70 *R/evaluate_phylopred_model.R
b4e82d0b5d957a16dcaff5a90b6f2f3e *R/fish_tree.R
b1709f76219d91951b76f630551cc767 *R/fit_phylopred_model.R
8994ea855668a8ad8530edb349f27102 *R/fit_phylopred_pu.R
8ffcb7d9e7364d7022b9b59399e590c4 *R/host_threshold_metric.R
a0c825f6efef9620dfbf4f3cec3f3593 *R/phy_dist.R
66988a391d0dbc1b8a66ed392cd47671 *R/phylo_partial_roc.R
ce0bbac941f9d0a002854d1f4dc5b03c *R/phylopred_confidence_ellipse.R
98959deefe9c026212e1bb460afbc4dd *R/poulin_std.R
44719c4c2425960351ca57fb555291bf *R/predict_phylopred_probability.R
2a12adc5fe51cae8d3b4a1fc27e903fb *R/prepare_incidence_matrix.R
e49d73acf490a8c09431ba582f477e8d *R/prepare_pair_data.R
c0ce4c1450a21734c707d278a21f6124 *R/utils-model.R
0be063033c470c3ee74da91373d1c629 *R/utils-validation.R
c24d94fe5639dcc4a1d5af258591a3c8 *R/validate_host_prediction.R
7fb42b8bedea596a1607a83749844a65 *README.md
76e123f5dcc8dee07678412adc0a2a84 *build/partial.rdb
0e00219698c3c7d018f3c2d9008e1198 *data/beetleTreeInteractions.rda
2d26d54d7eafb00765c1a56e2c502786 *data/fish_tree.rda
008d570b9c6991669ba42b5745c02fe0 *data/phy_dist.rda
425d5c744c79a447fe22526467db3e5a *inst/WORDLIST
6ad6beb2f34a82c3e44a745febd0aa89 *man/align_phylopred_inputs.Rd
3fc2893c9765ad592163dbb57895e777 *man/beetleTreeInteractions.Rd
4ba818680dc6a1a07e51747b640ff58f *man/bootstrap_phylopred_model.Rd
dd0e90a2781977d1bbb952ad46e03967 *man/cluster_bootstrap_phylopred.Rd
912768e507ba431b83dd9205f992346a *man/compare_phylopred_slopes.Rd
92c76394026be5ad55c5a83365deb5f8 *man/evaluate_phylopred_model.Rd
706a674adf97c79fe99041c2e10d7b7e *man/extract_phylopred_coefficients.Rd
5a5f65564459c2d3a5e07a7450449478 *man/fish_tree.Rd
4c6eb3e137d3385becdac4426ebf4ae4 *man/fit_phylopred_model.Rd
c1a11caa3d977b6c42954ca0b0bfc2d6 *man/fit_phylopred_pu.Rd
30f25eaeb9ffee7132754735964f32a9 *man/host_specificity_index.Rd
8160dce1a8f2430edd22b8ba180bec59 *man/host_threshold_metric.Rd
0f227003f2b3ff3de7ce4802d704c31e *man/phy_dist.Rd
589f523821e170a73d81a620c7a9207e *man/phylo_partial_roc.Rd
fdbfce94d5aa6a647c2a5bd74c9408c7 *man/phylopred_confidence_ellipse.Rd
237cfc6fcf38a03a03ebb3a628d8cf43 *man/poulin_std.Rd
6712678763eaebf26ac8e94fe3dfc170 *man/predict_phylopred_probability.Rd
a62f883023ab8641950eec97b8dd30ff *man/prepare_incidence_matrix.Rd
433d53635efc1d902f6e19da1cb3d756 *man/prepare_pair_data.Rd
037576eee41440d748e566e2c6965f1e *man/taxonomic_step_matrix.Rd
f98cf44c064fb312d54bb7cf1f3cd031 *man/validate_host_prediction.Rd
ea7ed2351d5ca8e4ac3b490d0a47c5b2 *tests/testthat.R
748c6cefb077b0c0db92d1552396adbe *tests/testthat/helper-fixtures.R
327ccd96f711e815ca0ec58653f5d4db *tests/testthat/test-evaluation.R
cee6924a44681995dc1b2c93d8cf7e94 *tests/testthat/test-holdout.R
0fde544038a3a105eb92aab5fa72f1b3 *tests/testthat/test-modeling.R
a7de832ff0fd7fff1909b785d782d9e8 *tests/testthat/test-pairwise.R
33e6e2b67910fd9f5a460b8d3150d262 *tests/testthat/test-pu.R
fd987a7eb161d44df9682314c9147382 *tests/testthat/test-specificity.R
b7626ad7ba8cc1c536d173683eff1e72 *tests/testthat/test-threshold-metrics.R
