agcounts 0.6.6
- Prepare agcounts for a CRAN submission
- Fix problem with
GGIR::g.calibrate needing GGIR::g.inspectfile results.
agcounts 0.6.5
- Update README.md file.
- Update code to allow interaction with data that is read into a tibble.
- Minor updates to the Shiny app
agcounts 0.6.4
- Updated the agcounts license with KU Copyright and Creative Commons (CC BY-NC-SA 4.0).
- Changed the parsers to reflect the Python and R package names.
- Created more flexibility for adding a Shiny app theme.
- Extending the
.last_complete_epoch function after discovering a file that did not find a complete epoch.
agcounts 0.6.3
- Improved test coverage including tests for the Shiny Server
- Removed the Shiny App from the inst folder to only make it a callable app using
agShinyDeployApp
agcounts 0.6.2
- Update the Shiny rawDataModule UI and Server to filter by AM or PM to make plotting faster
- Improved test coverage from 19 to 56% by adding tests for the Shiny UI,
gcalibrateC, get_counts, agread.
- Updated the test_actilife_counts.R file using a new data set that was uploaded for
gcalibrateC testing.
agcounts 0.6.1
- Added
start_time and stop_time attributes to data read by the pygt3x calibrated reader.
- Added
lubridate::floor_date to round data_start in case data doesn’t start on the specified epoch.
- Updated Shiny app documentation by moving all
importFrom documentation to the agShinyDeployApp function.
- Deployed the Shiny app to shinyapps.io and contained it in the inst/agcounts folder.
agcounts 0.6.0
- Developed a Shiny app to allow users to visualize, explore, and compare activity counts.
- Added the
.calculate_raw_metrics function to calculate ENMO and MAD for the Shiny App.
- Added the
.read_agd function to extract metadata and data from the ActiGraph agd file for the Shiny app.
- Changed the use of the bitwise ‘&’ with Boolean operands to ‘&&’ in the gcalibrate.cpp file.
- Updated README.md with the new
agread methods using the parser argument.
agcounts 0.5.0
- Updated pygt3x python reader (ActiGraph removed the CalibratedReader class).
- Added a C++ version of the GGIR
g.calibrate function called agcalibrate to be used within a piping structure with calculate_counts.
- Removed the agread S3 methods and replaced it with a switch statement.
- Added options for the user to choose a calibrated or uncalibrated parser.
- Removed test_calibrated_readers.R file since
agread.ggir and agread.pygt3x are no longer used.
- Added codecov to the
agcounts package.
agcounts 0.4.0
- Added Github R-CMD-check workflow.
- Created a S3 generic function to extract and handle idle sleep time.
- Created a S3 generic function to read in the raw acceleration data using calibrated readers.
- Replaced a for loop in the
.resample function with Rcpp to reduce processing time.
- Added a package hexagon sticker and updated the README with the calibrated readers.
- Added a unit test to test the calibrated readers.
agcounts 0.3.0
- Updated documentation for a new release
- Added Paul R. Hibbing as a package contributor.
agcounts 0.2.4
- Added a unit test to ensure the agcounts package and Actilife counts match
- Added a unit test to check if the output of the algorithm is as expected
- Added testthat (>= 3.0.0) to the description file.
agcounts 0.2.3
- Changed package namespace to include magrittr as an import
- Fixed the printing order of verbose by changing the magrittr’s pipe to eager pipe
- Added
dateTimeAs = "write.csv" to the data.table::fwrite function to correctly display time stamps when data are exported to csv
- Moved all of the internal functions in agcounts to the helpers.R file
agcounts 0.2.2
- Swapped in
min in a place where pmin was incorrectly used
agcounts 0.2.1
- Fixed automatic sampling frequency detection to remove assumption about file having >= 1000 rows
agcounts 0.2.0
- Split
calculate_counts out of get_counts to allow more flexible programming for end-users
- Moved the dot functions to internal
- Revised some of the logic for filling in missing timestamps during count extraction
- Revised some dealings with timezones to try making things more consistent
- Automated the detection of sampling frequency
agcounts 0.1.0